Tuesday, Sept. 10
PolishJapanese Institute

8:30 – 9:50

Invited talks
Chairperson: Jack Dongarra
 Legacy at Exascale: A Contradiction? A Software Approach to Achieving It  Robert Wisniewski, Intel
 The Changing Face of Advanced Computing and the Convergence of Modeling, Simulation, Analytics and Big Data  James Sexton, IBM T.J.Watson Research Center

9:50 – 10:20

Coffee break

10:20 – 12:25

Contributed papers (6 x 5 slots)

Track A: Main Track: Numerical Algorithms and Parallel Scientific Computing
Chairperson: Jacek Kitowski
 Methods for highthroughput computation of elementary functions  M. Dukhan, R. Vuduc
 Engineering nonlinear pseudorandom number generators  S. Neves, F. Araujo
 Extending the generalized Fermat prime number search beyond one million digits using GPUs  I. Bethune, M. Goetz
 Iterative solution of singular systems with applications  R. Blaheta, O. Jakl, J. Starý, E. Turan
 Statistical estimates for the conditioning of linear least squares problems  M. Baboulin, S. Gratton, R. Lacroix, A. Laub

Track B: WS on Numerical Algorithms on Hybrid Architectures
Chairperson: Przemyslaw Stpiczynski
 AVX acceleration of DD arithmetic between a sparse matrix and vector  T. Hishinuma, A. Fujii, T. Tanaka, H. Hasegawa
 Using quadruple precision arithmetic to accelerate Krylov subspace methods on GPUs  D. Mukunoki, D. Takahashi
 Effectiveness of sparse data structure for doubledouble and quaddouble arithmetics  T. Saito, S. Kikkawa, E. Ishiwata, H. Hasegawa
 Efficient heuristic adaptive quadrature on GPUs: design and evaluation  D. Thuerck, S. Widmer, A. Kuijper, M. Goesele
 Square block code for positive definite symmetric Cholesky band routines  F. G. Gustavson, J. R. Herrero, E. Morancho

Track C: WS on LanguageBased Parallel Programming Models
Chairperson: Ami Marowka
 Towards standardization of measuring the usability of parallel languages  A. Marowka
 Experiences with implementing task pools in Chapel and X10  C. Fohry, J. Breitbart
 Parampl: A simple approach for parallel and distributed execution of AMPL programs  A. Olszak, A. Karbowski
 Optimization of an OpenCLbased multiswarm PSO algorithm on an APU  W. Franz, P. Thulasiraman, R. Thulasiram
 Algorithms for inplace matrix transposition  F. G. Gustavson, D. Walker

Track D: Workshop on Applied High Performance Numerical Algorithms in PDEs
Chairpersons: Piotr Krzyzanowski, and L. Marcinkowski
 Variable block multilevel iterative solution of general sparse linear systems  B. Carpentieri, J. Liao, M. Sosonkina
 An automatic way of finding optimal elimination trees for sequential and parallel multifrontal direct solver for adaptive finite element method  H. Aboueisha, P. Gurgul, A. Paszynska, M. Paszynski, M. Moshkov, K. Kuźnik
 Parallel efficiency of an adaptive, dynamically balanced flow solver  S. Gepner, J. Majewski, J. Rokicki
 Modification of the Newton's method for the simulations of gallium nitride semiconductor devices  K. Sakowski, L. Marcinkowski, S. Krukowski
 A project of numerical realization of the onedimensional model of burning methanol  K. Moszynski

Track E: WS on Complex Collective Systems
Chairpersons: Pawel Topa, and Jaroslaw Was
 Probabilistic pharmaceutical modelling: a comparison between synchronous and asynchronous Cellular Automata  M. Bezbradica, H. J. Ruskin, M. Crane
 Coupling lattice Boltzmann gas and level set method for simulating free surface flow in GPU/CUDA environment  T. Kryza, W. Dzwinel
 Creation of agent's vision of social network through episodic memory  M. Wrzeszcz, J. Kitowski
 The influence of multiagent cooperation on the efficiency of taxi dispatching  M. Maciejewski, K. Nagel
 Basic endogenousmoney economy: an agentbased approach  I. Blecic, A. Cecchini, G. A. Trunfio

Track F: MS on High Performance Computing Interval Methods
Chairperson: Bartlomiej Kubica, and Pawel Sewastjanow
 Subsquares approach  simple scheme for solving overdetermined interval linear systems  J. Horáček, M. Hladík
 Using quadratic approximations in an interval method of solving underdetermined and welldetermined nonlinear systems  B. Kubica
 Interval finite difference method for solving the problem of bioheat transfer between blood vessel and tissue  M. A. Jankowska
 Chosen interval methods for solving an interval linear system of equations  B. Szyszka
 Numerical reproducibility in HPC: the interval point of view  N. Revol, P. Theveny

12:25 – 14:00

Lunch and poster session
Chairperson: Roman Wyrzykowski
 Improving perfect parallelism  L. Karlsson, C. Christian K. Mikkelsen, B. Kågström
 Parallel onesided Jacobi SVD algorithm with variable blocking factor  M. Becka, G. Oksa
 Using Intel Xeon Phi coprocessor to accelerate computations in MPDATA algorithm  L. Szustak, K. Rojek, P. Gepner
 Genetic programming in automatic discovery of relationships in computer system monitoring data  P. Koperek, W. Funika
 Genetic algorithms execution control under a global application state monitoring infrastructure  A. Smyk, M. Tudruj
 Nonperturbative methods in phenomenological simulations of ringshape molecular nanomagnets  P. Kozłowski, G. Musiał, M. Haglauer, W. Florek, M. Antkowiak, F. Esposito, D. Gatteschi
 Nonuniform quantum spin chains: static and dynamic properties  A. Barasinski, B. Brzostowski, R. Matysiak, P. Sobczak, D. Wozniak
 Neighborhood selection and rules identification for cellular automata: a rough sets approach  B. Płaczek
 The graph of Cellular Automata applied for modelling tumour induced angiogenesis  P. Topa
 Preconditioning iterative substructuring methods using inexact local solvers  P. Krzyzanowski
 An efficient representation on GPU for transition rate matrices for Markov chains  J. Bylina, B. Bylina, M. Karwacki
 EigenG: GPUbased eigenvalue solver for realsymmetric dense matrices  T. Imamura, S. Yamada, M. Machida
 A study on adaptive algorithms for numerical quadrature on hybrid GPU and multicore based systems  G. Laccetti, M. Lapegna, V. Mele, D. Romano
 The definition of intervalvalued intuitionistic fuzzy sets in the framework of DempsterShafer theory  L. Dymova, P. Sevastjanov

14:00 – 15:20

Invited talks (in parallel)
Track A:
Chairperson: Ewa Deelman
 Parallel DAG Scheduling: Recent Results and New Directions  Rizos Sakellariou, University of Manchester
 Exploring Emerging Technologies in the HPC CoDesign Space  Jeffrey Vetter, ORNL and Georgia Institute of Technology
Track B:
Chairperson: David Bader
 Optimization of data parallel applications for heterogeneous and hierarchical HPC platforms based on multicores and multiGPUs  Alexey Lastovetsky, University College Dublin
 Algebra and Geometry Combined Explains How the Human Mind Does Applied Math  Fred Gustavson, IBM T.J. Watson Research Center and Umea University

15:20 – 15:40

Coffee break

15:40 – 18:10

Contributed talks (6 x 6 slots)

Track A: Main Track: Numerical Algorithms and Parallel Scientific Computing
Chairperson: Inge Gutheil
 Numerical treatment of a crossdiffusion model of biofilm exposure to antimicrobials  K. Rahman, H. Eberl
 Performance analysis for stencilbased 3D MPDATA algorithm on GPU architecture  K. Rojek, L. Szustak, R. Wyrzykowski
 Elliptic solver performance evaluation on modern hardware architectures  M. Ciznicki, P. Kopta, M. Kulczewski, K. Kurowski, P. Gepner
 Parallel geometric multigrid preconditioner for 3D FEM in NuscaS software package  T. Olas
 Scalable parallel generation of very large sparse benchmark matrices  D. Langr, I. Šimeček, P. Tvrdík, T. Dytrych

Track B: MS on GPU Computing (2 slots)
Chairpersons: Jose Herrero, Enrique QuintanaOrti, and Robert Strzodka
 GPU implementation of the MonteCarlo simulations of the extended GinzburgLandau mode  P. Bialas, J. Kowal, A. Strzelecki
 Using GPUs for parallel stencil computations in relativistic hydrodynamic simulation  S. Cygert, D. Kikoła, J. PorterSobieraj, J. Sikorski, M. Słodkowski
Special Session on Multicore Systems (4 slots)
Chairpersons: Suleyman Tosun, and Ozcan Ozturk
 PDNOC: an efficient partially diagonal networkonchip design  T. C. Xu, V. Leppänen, P. Liljeberg, J. Plosila, H. Tenhunen
 Adaptive forkheuristics for software threadlevel speculation  Z. Cao, C. Verbrugge
 Inexact sparse matrix vector multiplication in Krylov subspace methods: An applicationoriented reduction method  A. Mansour, J. Götze
 The regular expression matching algorithm for the energy efficient reconfigurable SoC  P. Russek, K. Wiatr

Track C: WS on Scheduling for Parallel Computing
Chairperson: Maciej Drozdowski
 Scheduling BagofTasks Applications to Optimize Computation Time and Cost  A. Grekioti, N. V. Shakhlevich
 Scheduling Moldable Tasks with Precedence Constraints and Arbitrary Speedup Functions on Multiprocessors  S. Hunold
 OStrich: Fair Scheduling for Multiple Submissions  J. Emeras, V. Pinheiro, K. Rzadca, D. Trystram
 Fair share is not enough: measuring fairness in scheduling with cooperative game theory  P. Skowron, K. Rzadca
 Setting up clusters of computing units to process several data streams efficiently  D. Millot, C. Parrot

Track D: WS on Performance Evaluation of Parallel Applications on LargeScale Systems
Chairperson: Jan Kwiatkowski
 The effect of parallelization on a tetrahedral mesh optimization method  D. Benitez, E. Rodríguez, J. M. Escobar, R. Montenegro
 Analysis of partitioning models and metrics in parallel sparse matrixvector multiplication  K. Kaya, B. Ucar, U. Catalyurek
 Achieving memory scalability in the Gysela code to fit exascale constraints  G. Latu, J. Roman, F. Rozar
 Probabilistic analysis of barrier eliminating method applied to loadimbalanced parallel application  N. Yonezawa, K. Katou, I. Kino, K. Wada
 MultiGPU parallel memetic algorithm for capacitated vehicle routing problem  M. Wodecki, W. Bozejko, M. Karpiński, M. Pacut
 Parallel applications performance evaluation using the concept of granularity  J. Kwiatkowski

Track E: WS on Parallel Computational Biology
Chairperson: Bertil Schmidt
 Resolving load balancing issues in BWA on NUMA multicore architectures  C. Herzeel, T.J. Ashby, P. Costanza, W. De Meuter
 Kmulus: strategies for BLAST in the cloud  C. Hill, C. Albach, S. Angel, M. Pop
 Faster GPUaccelerated SmithWaterman Algorithm with Alignment Backtracking for Short DNA Sequences  Y. Liu, B. Schmidt
 Accelerating string matching on MIC architecture for motif extraction  S. Pissis, C. Goll, P. Pavlidis, A. Stamatakis
 A parallel, distributedmemory framework for comparative motif discovery  D. De Witte, M. Van Bel, P. Audenaert, P. Demeester, B. Dhoedt, K. Vandepoele, J. Fostier
 Parallel seedbased approach to protein structure similarity detection  G. Chapuis, M. Le Boudic  Jamin, R. Andonov, H. Djidjev, D. Lavenier

Track F: MS on HPC Applications in Physical Sciences
Chairpersons: Grzegorz Kamieniarz, and Wojciech Florek
 Simulations of the adsorption behavior of dendrimers  J. Klos, J. Sommer
 An optimized Lattice Boltzmann code for BlueGene/Q  M. Pivanti, F. Mantovani, S. F. Schifano, R. Tripiccione, L. Zenesin
 A parallel and scalable iterative solver for sequences of dense eigenproblems arising in FLAPW  M. Berljafa, E. Angelo D. Napoli
 Sequential Monte Carlo in Bayesian assessment of contaminant source localization based on the sensors concentration measurements  A. WawrzynczakSzaban, P. Kopka, M. Borysiewicz
 Effective parallelization of quantum simulations: nanomagnetic molecular rings  P. Kozłowski, G. Musiał, M. Antkowiak, D. Gatteschi
 DFT study of the Cr8 molecular magnet within chainmodel approximations  V. Bellini, D. M. Tomecka, B. Brzostowski, M. Wojciechowski, F. Troiani, F. Manghi, M. Affronte

18:40  20:00

Guided tour of Castle Square
The organizers provide buses from hotels: Campanile, Golden Tulip and Premiere Classe  departure at 18:40

20:00

Conference Dinner in "Sabat Theatre"
